Usage

API Token and the CAS Public Beta Program

In order to use the CAS API, you will need to join the CAS Public Beta program. To obtain your unique API token to join the public beta program, please navigate to the CAS webpage at cellarium.ai, scroll to the bottom of the page, and sign up. We will contact you with your unique API key as soon as the public beta is available.

Initialization

Create a CASClient instance with your API token:

from cellarium.cas import CASClient

api_token = "api_token_string_goes_here"
cas = CASClient(api_token=api_token)

Annotation

10x Cell Ranger h5 matrices

You can annotate 10x Cell Ranger h5 matrices from your local disk:

response = cas.annotate_10x_h5_file(filepath="your_path_to_local_h5_file.h5")

Anndata File from the disk

response = cas.annotate_anndata_file(filepath="your_path_to_local_h5_file.h5ad")

Anndata File instance

import anndata


adata = anndata.read("you_anndata_file.h5ad")
response = cas.annotate_anndata(adata)