Index

A

ALL_CELLS (cellarium.cas.postprocessing.ontology_aware.CellOntologyScoresAggregationDomain attribute) allowed_models_list (cellarium.cas.client.CASClient property) annotate_10x_h5_file() (cellarium.cas.client.CASClient method)

annotate_anndata() (cellarium.cas.client.CASClient method) annotate_anndata_file() (cellarium.cas.client.CASClient method) annotate_matrix_cell_type_ontology_aware_strategy() (cellarium.cas.client.CASClient method) annotate_matrix_cell_type_summary_statistics_strategy() (cellarium.cas.client.CASClient method)

C

CASCircularTreePlotUMAPDashApp (class in cellarium.cas.visualization) CASClient (class in cellarium.cas.client) cellarium.cas.client module

CellOntologyScoresAggregationDomain (class in cellarium.cas.postprocessing.ontology_aware) CellOntologyScoresAggregationOp (class in cellarium.cas.postprocessing.ontology_aware) CountMatrixInput (class in cellarium.cas.constants)

M

MEAN (cellarium.cas.postprocessing.ontology_aware.CellOntologyScoresAggregationOp attribute) MEDIAN (cellarium.cas.postprocessing.ontology_aware.CellOntologyScoresAggregationOp attribute)

module cellarium.cas.client

O

OVER_THRESHOLD (cellarium.cas.postprocessing.ontology_aware.CellOntologyScoresAggregationDomain attribute)

P

print_user_quota() (cellarium.cas.client.CASClient method)

Q

query_cells_by_ids() (cellarium.cas.client.CASClient method)

R

RAW_X (cellarium.cas.constants.CountMatrixInput attribute)

run() (cellarium.cas.visualization.CASCircularTreePlotUMAPDashApp method)

S

search_10x_h5_file() (cellarium.cas.client.CASClient method)

search_anndata() (cellarium.cas.client.CASClient method) search_matrix() (cellarium.cas.client.CASClient method)

V

validate_and_sanitize_input_data() (cellarium.cas.client.CASClient method)

validate_model_name() (cellarium.cas.client.CASClient method) validate_version() (cellarium.cas.client.CASClient method)

X

X (cellarium.cas.constants.CountMatrixInput attribute)